Environmental conditions as photoperiod regulate mammals’ physiology of particular interest is mammals in the Arctic due to the extreme conditions. To overcome those extreme conditions and save energy, Arctic ground squirrels hibernate. Hibernation is characterized by a low metabolic rate, which is seasonally modulated. However, in captivity, hibernation seems to be sensitive to disturbances. We think that short light exposures in the dark phase interfere with the set photoperiod leading to unusual hibernation patterns. We developed a simple 0D model of a possible hibernation process to investigate this behavior. A circadian rhythm model based on the time delayed differentials that results in the diurnal cycle regulation of EYA3 is used as a drive for the production of T3. T3 is hypothesized to increase the metabolic rate in summer by EYA3 activation. Additional light pulses effectively extend the total light exposure, which, subsequently, induces higher level of EYA3 production. This then leads to a general trend such that the squirrels may come out from hibernation sooner and go into hibernation later. Implications to this may affect how to care for squirrels under hibernation during extensive multi-year studies.